The sequenza-utils code is hosted in BitBucket.

Supported Python version are 2.7+, including python3, and pypy.

Sequenza-utils can be installed either via the Python Package Index (PyPI) or from the git repository.

The package uses the external command line tools samtools and tabix. For the package to function correctly such programs need to be installed in the system

Latest release via PyPI

To install the latest release via PyPI using pip:

pip install sequenza-utils

Development version

To use the test suite for the package is necessary to install also bwa Using the latest development version directly from the git repository:

git clone
cd sequenza-utils
python test
python install